Postino (Simple Italian Postman?) http://postinorestaurant.com/ What a difference a day makes? It was monday evening. Both Forum & I were not in any mood of cooking and thus we decided to go to an italian restaurant in the beautiful city of Lafayette. Random Google search, led me to this beautiful californian-italian place. The restaurant had its own charm with all brickish architecture adorned by faux finish and a woodburning oven. Forum ordered her all time favourite: home made pasta with marinara sauce and side of Alfredo and I ordered their egg plant parmesian with melted cheese and crispy basil on top. Great dishes, great taste though I must say that the best out of the breed was their home-bread with garlic-butter. The place also has an outside seating (sign of a romantic place, though we didn't dare to seat with rains falling cats-and-dogs). Overall, I would rate this as 8/10
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Summary of Supercomputing 05 Things I attended 1) Tutorial on datawarehousing for Genomics and Proteomics (Marshal Peterson, CTO-Craig venter institute) - Talked about the Sargasso sea experiment. - produced 100 million of genetic code every 24 hours - 1800 new species - 1.2 million new genes - 12 complete genomes - Before this experiment we knew about only 120-180k genes - looked for something like: Take all genes which might be efficient in producing ethanol - generated 1 billion base pairs of dna - 85% of sequence was only seen once - Used it to better understand the functioning of natural ecosystem 2) Talked about Data Warehousing Netezza performance server system: Using Assymetric Massively Parallel Architecture: - combines symmetric multiprocessing with massively parallel architecture - Basically they tried to bring processing power to the data instread of sending data to the processing power - Also had facility of sql-blast i.e adding blast capacity in sql. - They have this con...
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clawhmmer: blast: dynamic programming but relies on adhoc gap penalties, it still determines the type of guees HMMer:" probabilites model. Its robust, because it is a probabilisting it requires more flops new architectures: 1_ An order of magnitute more 2) Extremely parallel in nature 3) tiny processors 4) They share PC thousands of threads needed Brook of GPU: 1) Data is divided into streams 2) small function as KERNEL. fixed number of inputs and fix output 3) Encourages a data parallel type of programming challenges: 1) current software doesn't map well 2) large compute-> fetch ratio in the kernel 3)
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Computational Grand Challenges in Assembling the tree of life: problems and solutions: Part I: - HPC in biology - Grappa for reconstructuring evolutionary histories from gene order Recompute or infer the tree of life: a) cipres: cyber infrastructure to attempt a reconstruction of the tree of life b) Its not sure whether its a network . But if its a network then the argument is whether can an individual have more than one ancestor. c)